PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001958.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 323aa    MW: 36008.2 Da    PI: 6.1611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001958.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-21157207256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Itr_sc001958.1_g00001.1 157 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 207
                              59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-34156216No hitNo description
SMARTSM003801.7E-35157220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32157215IPR001471AP2/ERF domain
PROSITE profilePS5103223.38157214IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23157215IPR016177DNA-binding domain
PfamPF008471.1E-14158207IPR001471AP2/ERF domain
PRINTSPR003672.9E-11158169IPR001471AP2/ERF domain
PRINTSPR003672.9E-11180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAAAIDIYNS SSPVYIDPFR EELMKALEPF MKGASSSPPP SSLSSSPSIS SSSSSSYYPF  60
ESNFSTDPYL YHEFTPIPMF SGFESLGFEQ RGPIGLNQLT PSQILQIQAQ IHLQNQEQQS  120
LSSVVLPRQQ ASSCLGYLGP RPVSMKQSGA PNKPAKLYRG VRQRHWGKWV AEIRLPRNRT  180
RLWLGTFDTA EEAALAYDKA AYKLRGEYAR LNFPDLRHRF SQDFADFKPL PSSVDAKLQA  240
ICQNLAESQK PGSASQTKRT KNKPENKIKP ESGSSSSDSP ALSEESSPES DITFLDFPEP  300
SFEESENFNL QKFPSVEIDW SAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20156214160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177314.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E44e-77RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A068TYQ71e-119A0A068TYQ7_COFCA; Uncharacterized protein
STRINGPOPTR_0005s07900.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-48related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]