PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001985.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 201aa    MW: 23000.6 Da    PI: 5.4045
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001985.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-202174356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +R++f++ q++ Le++Fe +  p  + +++LAk+lgL+ rqV +WFqN+Ra+ k
  Itr_sc001985.1_g00005.1 21 NRRRFNDAQIQSLESMFEAQTRPELRVKQQLAKNLGLQPRQVAIWFQNKRARSK 74
                             79**************************************************99 PP
2HD-ZIP_I/II102.14.8e-3321112293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              ++rr+++ q+++LE++Fe++++ e + K++la++Lglqprqva+WFqn+RAR k+kq+E+dy++Lk +ydal+++ ++L++e+e+L
  Itr_sc001985.1_g00005.1  21 NRRRFNDAQIQSLESMFEAQTRPELRVKQQLAKNLGLQPRQVAIWFQNKRARSKSKQIEHDYRKLKMSYDALNSKLQTLKQEHESL 106
                              689*********************************************************************************** PP

              HD-ZIP_I/II  88 reelke 93 
                                +l++
  Itr_sc001985.1_g00005.1 107 LLQLQS 112
                              988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-19677IPR009057Homeodomain-like
SuperFamilySSF466893.68E-181077IPR009057Homeodomain-like
PROSITE profilePS5007117.411676IPR001356Homeobox domain
SMARTSM003891.1E-161880IPR001356Homeobox domain
PfamPF000461.2E-172174IPR001356Homeobox domain
CDDcd000864.38E-152277No hitNo description
PRINTSPR000311.9E-54756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000311.9E-55672IPR000047Helix-turn-helix motif
PfamPF021831.2E-1076116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MFPVEEDGLL HPGKGGGKDS NRRRFNDAQI QSLESMFEAQ TRPELRVKQQ LAKNLGLQPR  60
QVAIWFQNKR ARSKSKQIEH DYRKLKMSYD ALNSKLQTLK QEHESLLLQL QSLRKLTEET  120
GDKETDEEGT SLGTEEKPNC THQTSSPEFV LPQTNRPEAE TGVLNMIDTG EGSFSSIGEK  180
CEFETDGFFH NSCCSSQWWE F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192855.11e-124PREDICTED: homeobox-leucine zipper protein ATHB-7-like isoform X2
TrEMBLA0A1S3XR702e-60A0A1S3XR70_TOBAC; homeobox-leucine zipper protein ATHB-12-like
STRINGXP_009796883.14e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-27homeobox 7