PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002000.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 167aa    MW: 18680.5 Da    PI: 7.055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002000.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS168.84.3e-52216618195
                     GRAS  18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                              +la+al++++  la++++ +m+++a+yf+eAL +r++r        l ps+ +  + + +   +  f+e +P lkf+++t+   Il
  Itr_sc002000.1_g00008.1   2 KLAEALVKQIGFLAASQAGAMRKVATYFAEALTQRIYR--------LYPSNHN--DFAFSGLLQMHFYESCPHLKFAYFTT---IL 74 
                              689***********************************........4444444..56667667777*************95...** PP

                     GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                              ea++++++vH iDf+++qG+QWpaLlqaLa Rp+gpp++R+Tg+++p++++++ l+e+g++La++Ae+++v+fef+ +va++l+dl
  Itr_sc002000.1_g00008.1  75 EAFANKNCVHAIDFSMKQGMQWPALLQALALRPGGPPNFRLTGISPPSNDNTDHLQEVGWKLAQLAETINVEFEFRGFVANSLADL 160
                              ************************************************************************************** PP

                     GRAS 190 eleeLr 195
                              + ++++
  Itr_sc002000.1_g00008.1 161 DASMFN 166
                              *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.4551167IPR005202Transcription factor GRAS
PfamPF035141.5E-492166IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKLAEALVKQ IGFLAASQAG AMRKVATYFA EALTQRIYRL YPSNHNDFAF SGLLQMHFYE  60
SCPHLKFAYF TTILEAFANK NCVHAIDFSM KQGMQWPALL QALALRPGGP PNFRLTGISP  120
PSNDNTDHLQ EVGWKLAQLA ETINVEFEFR GFVANSLADL DASMFNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-21116734208Protein SCARECROW
5b3h_D1e-21116734208Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160270.11e-105PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W78e-92GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A068TWY62e-97A0A068TWY6_COFCA; Uncharacterized protein
TrEMBLA0A314L1W56e-96A0A314L1W5_NICAT; Della protein gai1
STRINGXP_009789076.12e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128641119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-83GRAS family protein