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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc002007.1_g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | G2-like | ||||||||
| Protein Properties | Length: 277aa MW: 31044.5 Da PI: 4.832 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 55.9 | 9.5e-18 | 35 | 91 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYRl 55
k+r +W pe H+ F+ v++LGG+ kA+P++i + m v+gLt+++v SHLQk Rl
Itr_sc002007.1_g00001.1 35 KTRFQWPPEHHSIFMGIVTNLGGIYKAVPSKIWKQMVvyVPGLTRANVSSHLQKVRL 91
689******************************99962279*************997 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 1.43E-10 | 33 | 92 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 5.9E-16 | 34 | 92 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.2E-12 | 35 | 91 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 277 aa Download sequence Send to blast |
MVVTENTAIN IIPADCVNQL VLENIADDIP KPPPKTRFQW PPEHHSIFMG IVTNLGGIYK 60 AVPSKIWKQM VVYVPGLTRA NVSSHLQKVR LLDTQLKKRG RPKRWNKTAK SHQKWYNSFA 120 ENEGWNYPSS ENHVLIAAAG NEDNSSLLYS PLRLAHGGEE QLLMSSQFFD DIFYNEINSG 180 QMQFASEPFG DNITGEDSLY SSVGSCMARS GQDNEWVNYG DDDDDFYYQL GTNQCPPNQG 240 QAIGEVISGQ EQAGTFQQNF NNQEFYIPTQ SAGRPAA |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G45580.1 | 5e-10 | G2-like family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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