PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002023.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 168aa    MW: 18968.1 Da    PI: 9.2579
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002023.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.38.4e-10147168122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDgy+WrKYG+K+vk++ +pr
  Itr_sc002023.1_g00004.1 147 LDDGYKWRKYGKKKVKSNSNPR 168
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-10133168IPR003657WRKY domain
SuperFamilySSF1182907.85E-8140168IPR003657WRKY domain
PROSITE profilePS5081112.622142168IPR003657WRKY domain
PfamPF031061.4E-5148168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSDMNPNFLG PNMMPTTPPS YTNPNSNNLH FPPEMIQDYA QDFDLSYVNT FLNDDHHHHY  60
SNVVNNPFAS SSSSLFSQPL LPPPTIVQDK SSTTSASSGS SGFDGMLPTT TTYPMQEVKS  120
TRQMVNRAKA KERHSVTFRT KTELEILDDG YKWRKYGKKK VKSNSNPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154566.11e-81PREDICTED: probable WRKY transcription factor 51
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134941217