PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002023.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 205aa MW: 23130.7 Da PI: 7.8797

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002023.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	30.8	5.8e-10	150	171	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYG+K+vk++ +pr Itr_sc002023.1_g00005.1 150 LDDGYKWRKYGKKKVKSNSNPR 171 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-10	136	171	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-8	143	172	IPR003657	WRKY domain
PROSITE profile	PS50811	12.495	145	205	IPR003657	WRKY domain
SMART	SM00774	0.0048	150	180	IPR003657	WRKY domain
Pfam	PF03106	7.5E-6	151	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSDMNPNFLG PNMMSTPPSY TNPNSNNLHF YPEMLQDYDY DYAQDFDLSY VNTLLNDDHH 60 YSNVVSNNPF ASSSTSSSSS LFSHPPPPPT IVQEKSSTTS ASSGSSGFDG MMPTTYPKQE 120 VNSMRQMVNT TKAKERHSIA FRTKTELEIL DDGYKWRKYG KKKVKSNSNP RFDVFSKHNL 180 INISKESSLQ LKLISMTSSY PSAFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154566.1	1e-78	PREDICTED: probable WRKY transcription factor 51

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13494	12	17