PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002027.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 257aa    MW: 28492.1 Da    PI: 8.2766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002027.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061426123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             +kC+ C k F +   L  H+r+H
  Itr_sc002027.1_g00009.1  4 FKCKLCLKQFVNGKALGGHMRSH 26
                             89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-7326No hitNo description
PfamPF139127.8E-9428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.616431IPR007087Zinc finger, C2H2
SMARTSM003550.059426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7138165No hitNo description
PfamPF139124.0E-4143165IPR007087Zinc finger, C2H2
SMARTSM003551.2143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66143170IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-5185210No hitNo description
PfamPF139124.9E-11186209IPR007087Zinc finger, C2H2
SMARTSM003550.08186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEKFKCKLCL KQFVNGKALG GHMRSHLAVL PLPPKTPPQK QQDSMDGGES TLSLCSSIVR  60
SVDPDPEFVD RESESESTRN PTRRRSKRAR RVFLGEAEEE KEKGKAKKVA ESSSSSSFSD  120
DEEIARCLMT LSQDVWSKTG DKFQCQICCR HFKSSQALGS HRTTHNRGEI QEQKPRNLPA  180
GVKIMHECPF CGKLFGSGQA LGGHKRSHSP TTKTPASSSC SSKLIIDLNL PAPMEDNDEP  240
EEAEVSAVSD EFRRVDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155149.11e-111PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A328DG599e-69A0A328DG59_9ASTE; Uncharacterized protein
STRINGXP_009591197.11e-64(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-34C2H2-like zinc finger protein