PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002031.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 194aa    MW: 21681.1 Da    PI: 8.4587
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002031.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof94.96e-303281554
                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54
                              ++cprC+s++tkfCy+nny+++qPry+C+aC+r+Wt+GG  r++P+Gg 
  Itr_sc002031.1_g00002.1 32 PKQCPRCHSDDTKFCYFNNYNMNQPRYYCRACKRHWTHGGIQRDIPIGGK 81
                             679*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-163080IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.2883387IPR003851Zinc finger, Dof-type
PfamPF027012.4E-273382IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEQGNGVGDY HPPLPSVRRL TTMEYPGTPP PPKQCPRCHS DDTKFCYFNN YNMNQPRYYC  60
RACKRHWTHG GIQRDIPIGG KXXXXTAFGP LALPPMVTPY HVQNGYLNMV NPLRTIESPY  120
NSSQNAFQPT SHYGSRSPNL FLNNNDGASS SNSIPFNAPV NSSTTSGYTN VGWSSLIANP  180
NDWLDFPRSF DPST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164591.15e-91PREDICTED: dof zinc finger protein DOF4.5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-23Dof-type zinc finger domain-containing protein