PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002075.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 205aa    MW: 24633.9 Da    PI: 5.0802
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002075.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.83e-21221444128
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkat 86 
                              G  F Pt+ +l++e+Lkkk+ +++l+  e+ike+  +y++ P+ Lp  k+k  ++ e y+F+++ +k ++g+    +  +g Wk+ 
  Itr_sc002075.1_g00003.1  22 GQYFCPTEYDLIDEFLKKKIGRRPLPN-EIIKEIpFLYEYLPELLPiWKFKYARNyEAYYFTHKGRKPPNGEFLGGKKFDGEWKTE 106
                              889*********************999.89****889*********645555444499*************998888889****** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g +++ +  +++  g k+ L fy  r++k  +t Wv++eyr 
  Itr_sc002075.1_g00003.1 107 GPEEACFGDENQILGYKRKLYFY--RSEK--RTGWVIKEYRY 144
                              ********999************..4444..89*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.63919161IPR003441NAC domain
SuperFamilySSF1019418.37E-2120170IPR003441NAC domain
PfamPF023658.9E-1222143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDELEAFERD YEPGMGIETI GGQYFCPTEY DLIDEFLKKK IGRRPLPNEI IKEIPFLYEY  60
LPELLPIWKF KYARNYEAYY FTHKGRKPPN GEFLGGKKFD GEWKTEGPEE ACFGDENQIL  120
GYKRKLYFYR SEKRTGWVIK EYRYNPKRVP AHYLQNRLFH DFLLNYVVLR IKFDPNLREN  180
FTAEESFSIS MDDAKDLDVF QDFEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161644.11e-118PREDICTED: NAC domain-containing protein 76-like isoform X2
RefseqXP_019161645.11e-118PREDICTED: NAC domain-containing protein 76-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.15e-13vascular related NAC-domain protein 1