PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002098.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-X1
Protein Properties Length: 1129aa    MW: 122246 Da    PI: 8.0575
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002098.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.25.5e-06316334119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C+++CH GpC+ C+
  Itr_sc002098.1_g00002.1 316 CGRHQCERICHVGPCDHCQ 334
                              ****************996 PP
2zf-NF-X117.21.1e-05438455118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG H+C+k CH G+C pC
  Itr_sc002098.1_g00002.1 438 CGVHRCEKVCHSGDCAPC 455
                              ****************** PP
3zf-NF-X118.64.1e-06534552119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C++lCH G CppC 
  Itr_sc002098.1_g00002.1 534 CGQHSCESLCHSGHCPPCL 552
                              ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.73E-6139209No hitNo description
PROSITE profilePS500168.733146207IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.45149205IPR001841Zinc finger, RING-type
PROSITE patternPS013590149204IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.41E-6238299No hitNo description
SMARTSM004380.17261279IPR000967Zinc finger, NF-X1-type
PfamPF0142242263278IPR000967Zinc finger, NF-X1-type
CDDcd060084.98E-11306354No hitNo description
PfamPF014224.4E-4316333IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043316335IPR000967Zinc finger, NF-X1-type
CDDcd060089.88E-8370413No hitNo description
PfamPF014220.011380397IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0028380399IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-13428476No hitNo description
PfamPF014224.4E-5438455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0028438457IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-4486545No hitNo description
PfamPF0142219496507IPR000967Zinc finger, NF-X1-type
CDDcd060087.85E-10524576No hitNo description
PfamPF014221.0E-4534551IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4534553IPR000967Zinc finger, NF-X1-type
CDDcd060089.01E-6581629No hitNo description
PfamPF0142213591607IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072591609IPR000967Zinc finger, NF-X1-type
PfamPF014220.0034644659IPR000967Zinc finger, NF-X1-type
SMARTSM004380.014644674IPR000967Zinc finger, NF-X1-type
CDDcd060085.36E-5672721No hitNo description
PfamPF0142227676702IPR000967Zinc finger, NF-X1-type
SMARTSM004380.033683704IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.5E-4928971IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MNFPVQSNRS DNSRRGRNYP GQTARQEWVP RGSSSTTAPT ATVTTTVESP AVAVDNLSSV  60
GIGRELEDRS VPQVYRSRNY TGPRRNAVRY ANQRRDRGMG RDKDNSERNK AEKVKEPDHN  120
NESKQLNDPN LPQLVQEIQE KLLKGTVECM ICYDMVRRSA SIWSCSSCYS IFHLNCIKKW  180
ARAPTSVDLS AEKNQGFNWR CPGCQYVQLT SSKDIRYICF CGKRQDPPTD LYLTPHSCGE  240
PCGKPLEKEV PGSGMSKEDL CPHHCVLQCH PGPCPPCKAF APPRSCPCGK KVITTRCSDR  300
KSVLTCGQRC DKLLACGRHQ CERICHVGPC DHCQVLVNAS CFCKKKTEVV LCGDMAVKGE  360
IKVENGVFSC SSHCEKKLSC GNHVCHEICH PGPCGDCALS PIKVKTCWCG KTSLTEARNS  420
CLDPIPTCSE VCTKTLRCGV HRCEKVCHSG DCAPCHVPVT QRCRCGSTSR TVECYRTFAE  480
DDIFTCDRPC GRKKSCGRHR CSERCCPLSN PNSSLTGDWD PHFCSMPCGK KLRCGQHSCE  540
SLCHSGHCPP CLETIFNDLT CACGRTSIPP PLPCGTPSPS CQYPCSIPQP CGHSSTHSCH  600
FGDCPPCAVP IAKECIGGHV VLRNIPCGSK DIRCNKLCGK TRQCGLHACA RTCHPAPCDS  660
SAGANAGSRA SCGQTCGAPR RDCRHTCTAL CHPSTPCPDT RCEFPVTISC SCGRITASVP  720
CDAGGSNGGH SADSIFEASI LQKLTSPLQP VEGNGKKVPL GQRKLICDDE CAKMEKKKVL  780
ADAFGINSSN SDALHFGENT AVSEVLSDLL RRDSKWVFSV EERCKFLVLG RGRGGVNALK  840
VHVFCPMLKE KRDAVRLIAE RWKLTVSAAG WEPKRFVVVH ATPKSKAPAR ILGAKGCTAS  900
SMLQPAIFDP LVDMDPRLVV ALFDLPRDAD ISALVLRFGG ECELVWLNDK NALAVFSDPA  960
RASAAMRRLD QGSAYYGAVG VPQIGVAPAT SNAWGGSSVN KDAGGGPMLK DNAWKQAVVQ  1020
ELNQRETTWG GSEEWTNSSS NMEPGVWKGK EAPPLAAASS NRWSVLDTET APSSSATSST  1080
VKGSLKKSAP NQVSDNETEA QSSDLQGQPQ HEGNAAAADV VDNWEEACD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8764760.0KJ876476.1 Ipomoea hederacea isolate Ihed245 anonymous locus IH06033 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169751.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
RefseqXP_019169752.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S3YGC00.0A0A1S3YGC0_TOBAC; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1U7VYN90.0A0A1U7VYN9_NICSY; NF-X1-type zinc finger protein NFXL1
STRINGXP_009622484.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1