PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002099.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24342.1 Da    PI: 8.9582
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002099.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.6e-231663249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ie k   qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ +
  Itr_sc002099.1_g00011.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63
                             78999999*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.413767IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-33766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-27886IPR002100Transcription factor, MADS-box
CDDcd002651.89E-34879No hitNo description
PRINTSPR004047.5E-20929IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAKRPSLGRQ KIKIEKIEMK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV  60
FSFGHPNVEL ITDRFLSGNQ HPLSSNNATL QLVEAHRSAT VRELNLQLSQ MMAESEIERK  120
RGEALDEMRK ESRRQHWWEA PVCDLGLPEL RQVRDAMEEL KKNVTAQAEK MNTCTFLGMD  180
GKTVFDHPET KPTRIMVNYT HALHDFGYDL TFS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189897.11e-142PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU44e-51AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1S3Y9T43e-97A0A1S3Y9T4_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009628464.12e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-53AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]