PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002101.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 194aa MW: 20720.8 Da PI: 3.8817

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002101.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	94	114	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++Cg ++++ L H+r Itr_sc002101.1_g00009.1 94 FTCEICGARYPTEKALFGHLR 114 89*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.9E-8	94	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.004	94	116	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	94	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MASGKETIPA SSSMGEGTEG SQKAAEGVAP PPSSPLPVPQ PAPVEDRDEE MVVGENEPDA 60 NQGVEGDAPP EAVQEGGDVV VAGEIAPAGQ AGDFTCEICG ARYPTEKALF GHLRCHKDRG 120 WRGAFRPPTF TMEEFAEYQE HLVKPEEEQL REIEAEERAA AGERVVLDVD LNEEVAPVEE 180 LILPDLNLPP PGEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A484MGR1	1e-25	A0A484MGR1_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9281	7	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	3e-10	C2H2 family protein