PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002150.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 295aa    MW: 32343.4 Da    PI: 7.1647
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002150.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30139198159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs edp++++ +YegeHnh+
  Itr_sc002150.1_g00004.1 139 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSVEDPSILIAIYEGEHNHP 198
                              58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-30133200IPR003657WRKY domain
PROSITE profilePS5081126.911134200IPR003657WRKY domain
SuperFamilySSF1182907.85E-26138200IPR003657WRKY domain
SMARTSM007742.7E-34139199IPR003657WRKY domain
PfamPF031064.5E-25140198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGYYSSTLGD KSLAIDLNTS INMDCEAADT CGNSNSSVGD QKHGLLMEEL KVTKMENKKL  60
TAKLTEVCEN YCTLQNHFLG LLKTHGADDD LLGKRKSADD DGDCYGAAAA SSPKRPRETR  120
TPVSRVRVKT DPSDMSLVVK DGYQWRKYGQ KVTRDNPSPR AYYKCSFAPS CPVKKKVQRS  180
VEDPSILIAI YEGEHNHPHP TQPEVLSVPL PQGFAPQSIC SPVSDVDNNS SSPARFDIRA  240
KLQRSLTSID SVELQHFLAE KMASSLTKNR SFTDALAAAI SDRILIDHAL ADSCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-191382001677Probable WRKY transcription factor 4
2ayd_A2e-19124200174WRKY transcription factor 1
2lex_A2e-191382001677Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167785.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLQ9SLW83e-84Q9SLW8_TOBAC; mRNA, 1346 bp sequence
STRINGXP_009610348.15e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-56WRKY DNA-binding protein 40