PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002159.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37257.4 Da    PI: 4.7737
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002159.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-1989143357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              k++++t eq+  Le+ Fe ++++  e++ +LAk+lgL+ rq+ +WFqNrRa++k+
  Itr_sc002159.1_g00002.1  89 KKRRLTGEQVLFLEKSFEVENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKN 143
                              56789************************************************95 PP
2HD-ZIP_I/II127.75e-4188178191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl+ eqv +LE+sFe e+kLeperKv+la+eLglqprq+a+WFqnrRAR+k+kqlEkdy+ Lk++yd lk++ ++L +e+++
  Itr_sc002159.1_g00002.1  88 EKKRRLTGEQVLFLEKSFEVENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKNKQLEKDYDGLKARYDDLKAKYDSLLNEKDS 173
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L++e+
  Itr_sc002159.1_g00002.1 174 LKAEV 178
                              **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2081146IPR009057Homeodomain-like
PROSITE profilePS5007117.24884144IPR001356Homeobox domain
SMARTSM003891.0E-1987148IPR001356Homeobox domain
CDDcd000861.04E-1889145No hitNo description
PfamPF000462.5E-1689143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2090151IPR009057Homeodomain-like
PRINTSPR000316.5E-6115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6124140IPR000047Helix-turn-helix motif
PfamPF021831.6E-14144185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEAGRGLFYG AAAAAGDSNF NALFLQNQRL PYQSSKEPLL TPGFSPSFHG SGSSSMVSFC  60
DGKGGFFRKF DQDENDCENY DDYFLQPEKK RRLTGEQVLF LEKSFEVENK LEPERKVQLA  120
KELGLQPRQI AIWFQNRRAR WKNKQLEKDY DGLKARYDDL KAKYDSLLNE KDSLKAEVLR  180
VMDKLVVKGK EKETLKFRDD IQHPSEAPSK DHMADSVAPS SPAPPVKLEG TSPSKSDVLD  240
SDSPRYTDGV HSSFPDIGDS SYVFEPERSD SDLSQDEDDS FSKNFMAASE SLSVFPKVRE  300
DHYPITIPPT NSSLYGFPVE DQTFGFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755158e-44HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankX949478e-44X94947.1 L.esculentum mRNA for homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198127.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022839e-45HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2R6QGY71e-106A0A2R6QGY7_ACTCH; Homeobox-leucine zipper protein
STRINGEOY217131e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]