PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002179.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24494.3 Da    PI: 5.0509
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002179.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-172064145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             k+i+n s r+v fskRr g++ KA+EL++LC+++v  i+ s  gk
  Itr_sc002179.1_g00001.1 20 KKIDNVSHRHVAFSKRRIGLFNKASELCILCGTQVVAIVESYGGK 64
                             68************************************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-221272IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.8151264IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-221387IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-121434IPR002100Transcription factor, MADS-box
PfamPF003191.8E-162169IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-123449IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-124970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MENNSAKKKQ TQGRRKIEIK KIDNVSHRHV AFSKRRIGLF NKASELCILC GTQVVAIVES  60
YGGKRVFTFG HPSADAVIER YLSNVPPRPA SEDDAPEENA VAQRYHRAWQ ELSAEKEKAA  120
ERDNGRGGGD HWWDLPIEDM GAMELEEFTA ALEELKKKAV LRADELEAAA AIIADNNYPN  180
NVNNNNLASS EVLTMLMNNN DDHTYETIDE CFNWFAAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165299.13e-93PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A484NGH34e-70A0A484NGH3_9ASTE; Uncharacterized protein
STRINGSolyc01g106700.2.11e-47(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62