PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002179.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18939.4 Da    PI: 10.847
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002179.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-221661247
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                             +ie k+  qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk +
  Itr_sc002179.1_g00002.1 16 KIETKTHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKPF 61
                             699***************************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-35766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.273767IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-28781IPR002100Transcription factor, MADS-box
CDDcd002653.14E-35876No hitNo description
PRINTSPR004049.9E-20929IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAKKPNMGRQ KIKIAKIETK THLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKP  60
FSFGNPNVGP ILDRFLSRNP HPVSGATALH LPEMNLQLTQ MMAASEMEKK RGEMLGRMRT  120
ERRRSRQYWW EAPISELGLP ELQQVMIAMD ELKKSVLQLI MAEFSKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-16781176MEF2C
5f28_B7e-16781176MEF2C
5f28_C7e-16781176MEF2C
5f28_D7e-16781176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165300.13e-95PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU42e-51AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1S3Y9T42e-68A0A1S3Y9T4_TOBAC; agamous-like MADS-box protein AGL62
TrEMBLA0A1U7UZ261e-68A0A1U7UZ26_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009761267.12e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-53AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]