PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002185.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 264aa    MW: 28960.2 Da    PI: 7.9838
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002185.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.61.8e-403090363
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                             e++lkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Itr_sc002185.1_g00005.1 30 EQSLKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 90
                             7899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-291987IPR003851Zinc finger, Dof-type
PfamPF027013.9E-343187IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6463387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MASSSQTLES MLGCTKAEQQ EKKAKPSADE QSLKCPRCDS TNTKFCYYNN YSLSQPRYFC  60
KSCRRYWTKG GTLRNVPVGG GCRKNKRSSS RPRTTQDPLF SSLTSTPLMP SLTTTLPYDR  120
PIICNNPSNN VNSCDVLESY GLLGHLGAGF LQTPGTNGLF HNLCYGIGIG IGSEQSNSVE  180
WNGGNGEMMG NSSYQDRICS GGVKQEVCYG RDEGESRLNW GFPWLQGGEE GANSDVISSS  240
RQSWNENGFG PYSSWHGLIN TPLM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763881e-45AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843601e-45AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177764.11e-138PREDICTED: dof zinc finger protein DOF2.1-like
RefseqXP_019177769.11e-138PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A4P1R9V41e-67A0A4P1R9V4_LUPAN; Uncharacterized protein
STRINGXP_009598584.18e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.14e-40Dof family protein