PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002203.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 109aa    MW: 11664.3 Da    PI: 8.874
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002203.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP72.57.6e-2362109148
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                              +CqvegC++ l++ak yhr+hkvCe+h+kap+vl+ g++qrfCqqCsr
  Itr_sc002203.1_g00009.1  62 RCQVEGCKVGLENAKGYHRKHKVCEMHAKAPKVLLLGHQQRFCQQCSR 109
                              6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-2455109IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.88860109IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-2161109IPR004333Transcription factor, SBP-box
PfamPF031105.9E-1863109IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MENNGWSLFT QNAWDMWALS CGSSMGDPLV VPLNLNAAAH EGGVVVKRSK SAGGGGGGGE  60
ARCQVEGCKV GLENAKGYHR KHKVCEMHAK APKVLLLGHQ QRFCQQCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-1653109157squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016476532.17e-22PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
RefseqXP_016476533.16e-22PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
TrEMBLA0A0B2SLL79e-21A0A0B2SLL7_GLYSO; Squamosa promoter-binding-like protein 7
TrEMBLA0A1S4AIK92e-20A0A1S4AIK9_TOBAC; squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A1S4AJD61e-20A0A1S4AJD6_TOBAC; squamosa promoter-binding-like protein 7 isoform X2
STRINGXP_009625590.13e-21(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.43e-15squamosa promoter-like 11