PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002258.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 269aa    MW: 29754.1 Da    PI: 4.5652
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002258.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.5e-383288662
                   zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++s+
  Itr_sc002258.1_g00006.1 32 PNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRSK 88
                             58***************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-291886IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5653286IPR003851Zinc finger, Dof-type
PfamPF027014.6E-323286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLSSESSPML DCHSIRPILM DRKWKPNIEL APNCPRCAST NTKFCYYNNY SLSQPRYFCK  60
GCRRYWTKGG SLRNVPVGGG CRKTRRSKSA RQAAEQQRSN AHHAPAGGLD NGSAGAEEID  120
MAAVFAKYLN QGDLSPSGAT SSTSASMALS SLDSESQVDE LLLLDYQEDP SPLFLDQAVE  180
LQESSPQASI NVEEHLLDYN QSALDLQALL EDDQWPNFAW QQPMIQQQDL GTFFGDNDLV  240
YPTKASTTLP NNDVWGSFDL SGCEILPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572746e-41DQ857274.1 Glycine max Dof23 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174332.11e-160PREDICTED: dof zinc finger protein DOF1.2
TrEMBLA0A068VC274e-70A0A068VC27_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000020606e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.19e-43Dof family protein