PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002340.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 308aa    MW: 33556.2 Da    PI: 5.8553
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002340.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.92e-17136191361
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                              ++kr +r+++NRe+ArrsR+RK+++++eLe+ v++L +eN +L    ++l++ +++ k+
  Itr_sc002340.1_g00007.1 136 DVKRIKRMASNRESARRSRRRKQEQLAELENQVDQLRGENASLF---KQLTDAAQQYKD 191
                              68**************************************9999...555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-16134198IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.323136188IPR004827Basic-leucine zipper domain
PfamPF001701.2E-14137190IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.7E-12138190No hitNo description
SuperFamilySSF579591.29E-11138188No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKKAGIPKN IRELGVRDMK KSPSEQALAE LFGGKNGGGD KDISSWEEDV MYGLSSFNPL  60
SDHANFWSKK TTPNYGPGDA QSSTCVGFRN SSIKPNGSDN QMTGATSGSS HELYEDDDME  120
AEGGDACEQS GVNNTDVKRI KRMASNRESA RRSRRRKQEQ LAELENQVDQ LRGENASLFK  180
QLTDAAQQYK DSSTNNRVLK SDVEALRAKV KLAEDMVTRG SVNSSLSHLI QNCLTAPAAL  240
GNNNVCRLDN MCSTIISVPE GLQRLPIQQG GPTPTMRLQN TDSSLKNNNG VMSEVVSCVS  300
DMWSPLAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238GGKNGGG
2150157RRSRRRKQ
3152157SRRRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166846.11e-142PREDICTED: basic leucine zipper 9-like
TrEMBLA0A3Q8TB534e-70A0A3Q8TB53_DIOKA; Transcription factor bZIP8
STRINGXP_009801058.12e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.17e-37basic leucine zipper 9