PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002342.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 215aa    MW: 23213.4 Da    PI: 6.6053
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002342.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.6e-42391381100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q
  Itr_sc002342.1_g00005.1  39 PCAACKILRRRCAEKCVLAPYFPPTDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGSAGAICHLQKQ 124
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+a+la++++e
  Itr_sc002342.1_g00005.1 125 VSELQAQLAQTQAE 138
                              *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.90738139IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-4239136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESSSCETTA TAVTPPSSRS VSPSSSSSPP PPSSLVVSPC AACKILRRRC AEKCVLAPYF  60
PPTDPIKFTT AHRVFGASNI IKFLQELPES QRADAVSSMV YEANARLRDP VYGSAGAICH  120
LQKQVSELQA QLAQTQAELL NMQCQLQAQA NHLMARVCME MPPPPPLLHQ QSGLFDSCGG  180
VTAATETAQH HGLLSTLDDN NFGHSFGWEL QTMWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-413814410116LOB family transfactor Ramosa2.1
5ly0_B4e-413814410116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199174.11e-110PREDICTED: LOB domain-containing protein 1
SwissprotQ9SK089e-65LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1S4D8504e-81A0A1S4D850_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009610820.17e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-55LOB domain-containing protein 1