PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002357.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 256aa MW: 28724.5 Da PI: 8.1946

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002357.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.4	5.3e-09	36	86	1	52
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteker 52 +fY++Y +vGF +r + ks ++g i++++ vC++eg++++ +++++++ Itr_sc002357.1_g00003.1 36 EFYKNYVVKVGFVTRSNFVVKS-QDGMIVTKHIVCNREGFKNSGAQHSNSKS 86 6**************99999.8888************99988844433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-7	36	85	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-9	144	187	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MLFICYSSND LQSGNNLNEI KPLLGMSFTT LEAATEFYKN YVVKVGFVTR SNFVVKSQDG 60 MIVTKHIVCN REGFKNSGAQ HSNSKSNVDA GEGIPFQRGK EFQTELVAKL GLYSSTREVL 120 VMSCAGYFGQ IQSQKKNYVA FRDVVSFDGT YSTNRYSMVF TPFTGVDNHK KCVTFGVGLL 180 LKEDIKDVFM GGLLRTTSRS ESENYAFSRF TIPQSSLVEF LINFDSALDS QRHINAKHNS 240 DNEWSRYVSP VSLVEC

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-11	FAR1 family protein