PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002378.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 303aa    MW: 33489.6 Da    PI: 7.9343
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002378.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.5e-17167221256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++t++q   Le+ F+++++++ + ++ LAk+l+L  rqV vWFqNrRa+ k
  Itr_sc002378.1_g00002.1 167 RKKLRLTRQQSAFLEQTFKQHSTLNPKNKAALAKQLNLRPRQVEVWFQNRRARTK 221
                              678899***********************************************98 PP
2HD-ZIP_I/II121.93.2e-39167257192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+++q+++LE++F+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++d+l+een+rL+ke +e
  Itr_sc002378.1_g00002.1 167 RKKLRLTRQQSAFLEQTFKQHSTLNPKNKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCDTLREENKRLQKELQE 252
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              Lr +lk
  Itr_sc002378.1_g00002.1 253 LR-ALK 257
                              *9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-17143224IPR009057Homeodomain-like
SuperFamilySSF466895.85E-18155224IPR009057Homeodomain-like
PROSITE profilePS5007116.487163223IPR001356Homeobox domain
SMARTSM003899.7E-13165227IPR001356Homeobox domain
CDDcd000865.62E-15167224No hitNo description
PfamPF000464.6E-15167221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
SMARTSM003406.7E-19223268IPR003106Leucine zipper, homeobox-associated
PfamPF021832.7E-10223257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELGLSVGGD SSSIPSLKPF SFLEISAYED QKNIWRGKDN NNNIGFCMGA LGDGGTEEEE  60
EEEDEEPPLQ LALLPLSPPP LPCAARFPCL SHNLGSEPGF LSNFLAGKGR GSGGGAEEAA  120
SGASSSFPAR WWSRKRDMMR ERGGSSNNNS VGSDEIEDEI INGGLGRKKL RLTRQQSAFL  180
EQTFKQHSTL NPKNKAALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLRRCCDTLR  240
EENKRLQKEL QELRALKKTT TSHLFYNHLP ATTLNICPSC TRTATTTPSA ATNTALSLPK  300
SEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215223RRARTKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165851.11e-131PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
TrEMBLA0A2K2A4R11e-79A0A2K2A4R1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20820.13e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-58homeobox from Arabidopsis thaliana