PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002386.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 291aa    MW: 33777.6 Da    PI: 10.4149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002386.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-141053448
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             W   Ede+l+ av ++G+++W++I++ +  +++++qck rw+ +l
  Itr_sc002386.1_g00003.1 10 WKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAEQCKARWYEWL 53
                             999**************************.************986 PP
2Myb_DNA-binding27.66.9e-096397340
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                              WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc
  Itr_sc002386.1_g00003.1 63 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQC 97
                             7*****************99.********8..*****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.77257IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-16556IPR009057Homeodomain-like
SuperFamilySSF466892.19E-17695IPR009057Homeodomain-like
SMARTSM007173.0E-14655IPR001005SANT/Myb domain
PfamPF002492.0E-111053IPR001005SANT/Myb domain
CDDcd001671.57E-111053No hitNo description
CDDcd116594.06E-235598No hitNo description
Gene3DG3DSA:1.10.10.605.8E-95797IPR009057Homeodomain-like
PROSITE profilePS512948.9158104IPR017930Myb domain
SMARTSM007170.01860102IPR001005SANT/Myb domain
PfamPF002493.4E-76397IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRFMIKGGIW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAEQCKARWY EWLDPSIKKA  60
STEWTREEDE KLLHLAKLMP TQWRTIAPIV GRTPSQCLGL SPGRAGHPVD MDEDEKEMLS  120
EARARLANTR GKKAKRKARE KQLQEARRLA SLQKRRELKA AGIDDVPHRN RKRKGIDYNA  180
EIPFEKKPPP GFYDVTDEDH TVEQPKFPTT IEELEGERRV DKEARLRKQD IARYKIAQRQ  240
DAPSAIFHDS ETVRKRTKLN LPAPQISDHE LEAIAKFGIA SYQRHSASRW F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-10822813317Cell division cycle 5-like protein
5xjc_L1e-10822813317Cell division cycle 5-like protein
5yzg_L1e-10822813317Cell division cycle 5-like protein
5z56_L1e-10822813317Cell division cycle 5-like protein
5z57_L1e-10822813317Cell division cycle 5-like protein
5z58_L1e-10822813317Cell division cycle 5-like protein
6ff4_L1e-10822813317Cell division cycle 5-like protein
6ff7_L1e-10822813317Cell division cycle 5-like protein
6icz_L1e-10822813317Cell division cycle 5-like protein
6id0_L1e-10822813317Cell division cycle 5-like protein
6id1_L1e-10822813317Cell division cycle 5-like protein
6qdv_O1e-10822813317Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153173KRRELKAAGIDDVPHRNRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192775.11e-162PREDICTED: cell division cycle 5-like protein isoform X1
SwissprotP929481e-144CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1J6HZR41e-155A0A1J6HZR4_NICAT; Cell division cycle 5-like protein (Fragment)
TrEMBLA0A484LYS71e-154A0A484LYS7_9ASTE; Uncharacterized protein
STRINGSolyc04g009950.2.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-146cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]