PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002478.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 282aa    MW: 31948.1 Da    PI: 7.2907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002478.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-182673148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd ll+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
  Itr_sc002478.1_g00003.1 26 RGPWTPEEDTLLIHYIACHGEGRWNLLAKSSGLRRTGKSCRLRWLNYL 73
                             89********************************************97 PP
2Myb_DNA-binding48.91.5e-1579122146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ +++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Itr_sc002478.1_g00003.1  79 RGNLSPQEQLLILELHSKWGNR-WSKIAQFLP-GRTDNEIKNYWRT 122
                              7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8692173IPR017930Myb domain
SuperFamilySSF466896.64E-3124120IPR009057Homeodomain-like
SMARTSM007171.1E-142575IPR001005SANT/Myb domain
PfamPF002491.6E-162673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-232780IPR009057Homeodomain-like
CDDcd001676.10E-122873No hitNo description
PROSITE profilePS5129424.27574128IPR017930Myb domain
SMARTSM007172.8E-1478126IPR001005SANT/Myb domain
PfamPF002491.2E-1479122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2381127IPR009057Homeodomain-like
CDDcd001672.01E-1183122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASSPSKSST SSCLTVEDMD GTELRRGPWT PEEDTLLIHY IACHGEGRWN LLAKSSGLRR  60
TGKSCRLRWL NYLKPDVKRG NLSPQEQLLI LELHSKWGNR WSKIAQFLPG RTDNEIKNYW  120
RTRVQKQARH LKIDSNSAAF QQLIRGFWMP RLIQKIQASS IQHSDEILNT QSISQQVPAP  180
APAPHDCHQT TIINSGLENT PNLKLSECPK TALSNDPKFE PCPNGHHQYY ATHLMDGFSP  240
SPFPETGEFK DVIDYDLLGT GGGNSLIMDE FLDDSLWSMD KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26231284108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189643.11e-173PREDICTED: transcription factor MYB21-like
TrEMBLM1A4484e-89M1A448_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000143837e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-79myb domain protein 116