PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002481.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 67aa    MW: 7532.8 Da    PI: 12.5969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002481.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05219623
                             TTEEESSHHHHHHHHHHT CS
                  zf-C2H2  6 CgksFsrksnLkrHirtH 23
                             Cg++F+++  L  H+r+H
  Itr_sc002481.1_g00007.1  2 CGRRFNSHQALFEHMRLH 19
                             ****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.704124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MCGRRFNSHQ ALFEHMRLHR SHVRRGAFPP PILNRGHLTN VLPLHGIAAR DGQVVVIQPP  60
SIATPPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-07C2H2 family protein