PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002569.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 1675aa MW: 188203 Da PI: 4.9566

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002569.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	25	80	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps++ r+eL++klgLt+rq ++WF+ rR k+kk Itr_sc002569.1_g00004.1 25 PKRQMKTPFQLETLEKVYAMETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKK 80 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-19	5	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-17	13	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	21	81	IPR001356	Homeobox domain
SMART	SM00389	3.1E-18	23	85	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	25	80	IPR001356	Homeobox domain
CDD	cd00086	8.08E-15	26	81	No hit	No description
PROSITE profile	PS50827	15.942	509	568	IPR018501	DDT domain
SMART	SM00571	6.7E-22	509	568	IPR018501	DDT domain
Pfam	PF02791	5.3E-17	510	565	IPR018501	DDT domain
Pfam	PF05066	1.1E-12	691	758	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.3E-5	872	916	IPR028942	WHIM1 domain
Pfam	PF15613	2.4E-13	1046	1118	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1675 aa Download sequence Send to blast
MEGGSEGESN KNAQHSPSDG QNKKPKRQMK TPFQLETLEK VYAMETYPSE AIRAELSEKL 60 GLTDRQLQMW FCHRRLKDKK EAAGVAAMKP RVGPNGGASG KRSFAELTRD EVTIPEPGSD 120 HRSGSGSGSG SGSGSGSSQF DNGDGMPTMP VRYYESPRTA KERKIIACIE SQLGEPLRSD 180 GPILGVEFDE LPPGAFGAPI VPTERRDHYR HSYDTKLFGG YEPKQYNALP SGLHEPAEPK 240 IRSDGYDQIA PSYHYGSPAR GPTKPLSVMK GNGHFSREYT VESQASTINV LPQHGFQGQF 300 QSPPRESEFV TPNEGTLQMD HERKNDEARI GREALAHEKR IRKELEKQDL LRRKREEQMK 360 KEMERLDRER KKEEQRLMRE QQRKEERFQR EEKREMERRE KFLQRELLRA ERKRQKEELR 420 KEREAAKQKA AMERAAARKF AKEAMELIED ERLELMELAA SNKGLSSIAS LDYDTLQNLE 480 LYREFLCEFP PKSIEMKRPF SIQPWIDSQE NIGNLLMAWR FCINFADVLG LWPFTLDEFV 540 QAFHDYDSRL LSEIHIALLK LIIKDIEDVV RTPSGGPGTN QYNAVNPEGG HPQIVEGAYV 600 WGFDICNWQK HLNPLTWPEV LRQFALSAGF GPQLKKKNKE QGGLNDNDET KGCEDIVSTL 660 RSGSAAENAV AIMHEKGFML QRKSRHRLTP GTVKFAAYHL LALEGEKGLN VIELAEKIQK 720 SGLRDLTTSK TPEASISVAL SRDPVLFERI APSTYCVRPA FRKDPANAEE IISVAREKIQ 780 RYVNGFLAGQ NADDEERDDD SECDAADGQE IDDIGTPSDV IKNTDLQNDI GTCSVNGKDN 840 PSVAVDKKNG FDTVGIGGSN PGQEGGEIDE SQSGEPWVQG LTEGEYSNLC VEERLNALVA 900 VIGIASEGNT IRAILEDRLD AATALKKQMW AEAQLDRRRM KEENIIKFHD SSFGAAAEGS 960 QSPFTLPDNK VHEPAQAAVV NDGSVGLDNA QNQLELLPAE KSLAPQDFST SSFISSIQPS 1020 GYTAERSRMQ LKSFIGHKAE EMYVYRSLPL GQDRRRNRYW LFVASGSSHD PGSGRIFVES 1080 PDGFWRLIDT EEAFDALLTS LDTRGLRESH LHIMMKKIEI PFRERVRRNT LQNGSVVQCE 1140 NATRNEAAEA SSGGDSPSSM VCSTSSDRWE PSFKIELGKN EEEKRNALRR YQDFQIWMWK 1200 EHFGSSILCA LAHGQKRCLP LLGVCDRCLD TFLFEEDFCS SCHRTFANGD FVVKLLESEI 1260 SYGDIIQFDS ENVVISSTSC PLRIILIKAL LSMLEVSIPS EAFQSSWTED TRKIWGLNLH 1320 NSSSTEDLLQ ILTQLEGFVK QDYLSSNFET TKELLRHYAS SRAPACQSVS QLPWIPLTTA 1380 AVALRLFEFD ASVSYDPEPK AEPCNGLKVE SFPKSPMGYA SINDIQKVES TALDRGVHRK 1440 EENWNYLGTT PGSSRGKQMA RGRGGGRPRG RLTKGSARSA SESTPPVARR GETLTHALMQ 1500 QGETQVQKHM RGRRTVRRRR ERNLVIEDIH HEYLGDEDNH RSVAESPESH RGQDDLMDIN 1560 MERTPVENDN NSNSGEAMES DDSAQENPYE FGKWDPQFNT SNRSNELMEM SDEDADNTSN 1620 DEEEEDEDDA RYRDEDGQNL GSGGDLDMED NGEDELDRNG DEQGSESDGS GDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1675 aa Download sequence Send to blast

MEGGSEGESN KNAQHSPSDG QNKKPKRQMK TPFQLETLEK VYAMETYPSE AIRAELSEKL  60
GLTDRQLQMW FCHRRLKDKK EAAGVAAMKP RVGPNGGASG KRSFAELTRD EVTIPEPGSD  120
HRSGSGSGSG SGSGSGSSQF DNGDGMPTMP VRYYESPRTA KERKIIACIE SQLGEPLRSD  180
GPILGVEFDE LPPGAFGAPI VPTERRDHYR HSYDTKLFGG YEPKQYNALP SGLHEPAEPK  240
IRSDGYDQIA PSYHYGSPAR GPTKPLSVMK GNGHFSREYT VESQASTINV LPQHGFQGQF  300
QSPPRESEFV TPNEGTLQMD HERKNDEARI GREALAHEKR IRKELEKQDL LRRKREEQMK  360
KEMERLDRER KKEEQRLMRE QQRKEERFQR EEKREMERRE KFLQRELLRA ERKRQKEELR  420
KEREAAKQKA AMERAAARKF AKEAMELIED ERLELMELAA SNKGLSSIAS LDYDTLQNLE  480
LYREFLCEFP PKSIEMKRPF SIQPWIDSQE NIGNLLMAWR FCINFADVLG LWPFTLDEFV  540
QAFHDYDSRL LSEIHIALLK LIIKDIEDVV RTPSGGPGTN QYNAVNPEGG HPQIVEGAYV  600
WGFDICNWQK HLNPLTWPEV LRQFALSAGF GPQLKKKNKE QGGLNDNDET KGCEDIVSTL  660
RSGSAAENAV AIMHEKGFML QRKSRHRLTP GTVKFAAYHL LALEGEKGLN VIELAEKIQK  720
SGLRDLTTSK TPEASISVAL SRDPVLFERI APSTYCVRPA FRKDPANAEE IISVAREKIQ  780
RYVNGFLAGQ NADDEERDDD SECDAADGQE IDDIGTPSDV IKNTDLQNDI GTCSVNGKDN  840
PSVAVDKKNG FDTVGIGGSN PGQEGGEIDE SQSGEPWVQG LTEGEYSNLC VEERLNALVA  900
VIGIASEGNT IRAILEDRLD AATALKKQMW AEAQLDRRRM KEENIIKFHD SSFGAAAEGS  960
QSPFTLPDNK VHEPAQAAVV NDGSVGLDNA QNQLELLPAE KSLAPQDFST SSFISSIQPS  1020
GYTAERSRMQ LKSFIGHKAE EMYVYRSLPL GQDRRRNRYW LFVASGSSHD PGSGRIFVES  1080
PDGFWRLIDT EEAFDALLTS LDTRGLRESH LHIMMKKIEI PFRERVRRNT LQNGSVVQCE  1140
NATRNEAAEA SSGGDSPSSM VCSTSSDRWE PSFKIELGKN EEEKRNALRR YQDFQIWMWK  1200
EHFGSSILCA LAHGQKRCLP LLGVCDRCLD TFLFEEDFCS SCHRTFANGD FVVKLLESEI  1260
SYGDIIQFDS ENVVISSTSC PLRIILIKAL LSMLEVSIPS EAFQSSWTED TRKIWGLNLH  1320
NSSSTEDLLQ ILTQLEGFVK QDYLSSNFET TKELLRHYAS SRAPACQSVS QLPWIPLTTA  1380
AVALRLFEFD ASVSYDPEPK AEPCNGLKVE SFPKSPMGYA SINDIQKVES TALDRGVHRK  1440
EENWNYLGTT PGSSRGKQMA RGRGGGRPRG RLTKGSARSA SESTPPVARR GETLTHALMQ  1500
QGETQVQKHM RGRRTVRRRR ERNLVIEDIH HEYLGDEDNH RSVAESPESH RGQDDLMDIN  1560
MERTPVENDN NSNSGEAMES DDSAQENPYE FGKWDPQFNT SNRSNELMEM SDEDADNTSN  1620
DEEEEDEDDA RYRDEDGQNL GSGGDLDMED NGEDELDRNG DEQGSESDGS GDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	80	RRLKDKKE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB072276	6e-76	AB072276.1 Ipomoea nil transposon Tpn106 DNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175748.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A484JZJ2	0.0	A0A484JZJ2_9ASTE; Uncharacterized protein
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1