PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002579.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family DBB
Protein Properties Length: 237aa    MW: 26172.2 Da    PI: 7.3707
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002579.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-07430531
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedCll 31
                              C+ +e+  ++lfC  ++  lC+ C +
  Itr_sc002579.1_g00005.1  4 LCDACESAAAILFCAADEAALCRACDE 30
                             7************************87 PP
2zf-B_box261.9e-0877116237
                 zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                              + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Itr_sc002579.1_g00005.1  77 KVQRCDICENAPAFFYCEIDGSSLCLQCDMMVHVGgkrtH 116
                              6799**************************9996544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.973130IPR000315B-box-type zinc finger
SMARTSM003360.21141IPR000315B-box-type zinc finger
CDDcd000216.94E-5332No hitNo description
PROSITE profilePS501199.18676121IPR000315B-box-type zinc finger
SMARTSM003365.5E-1176121IPR000315B-box-type zinc finger
PfamPF006434.0E-677110IPR000315B-box-type zinc finger
CDDcd000211.50E-680109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRTLCDACES AAAILFCAAD EAALCRACDE KVALSGSVCM LSSLFVLLRM LSRVLQVHMC  60
NKLASRHVRV GLADPSKVQR CDICENAPAF FYCEIDGSSL CLQCDMMVHV GGKRTHGRYL  120
LIRQRIEFPG DKSGPLDEPG LQPTEKAEPR REPNHPFKLM MKENKPTNRD SAVAMLDKNA  180
DVGSKMENKL IDLNTRPHRM HGQASANQEP GIDGLSDNNH EPGCVIPIGP LKRETEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396503e-36AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence.
GenBankHG9754403e-36HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-36HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157431.11e-150PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM51e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A328E3351e-114A0A328E335_9ASTE; Uncharacterized protein
TrEMBLA0A484LD411e-114A0A484LD41_9ASTE; Uncharacterized protein
STRINGXP_009631316.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.38e-82DBB family protein