PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002583.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 295aa    MW: 33487.7 Da    PI: 7.9446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002583.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.5e-09172220455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L+e++P +   ++  +  a +L + ++Y++sLq
  Itr_sc002583.1_g00009.1 172 SHSLAERVRRGKINERLKCLQEIVPGC---YKVAMGMAVMLDEIINYVQSLQ 220
                              8**************************...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.08E-9166224No hitNo description
SuperFamilySSF474593.79E-15166236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-14168228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.837168219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6172220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-9174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSEHHFTPAD MQSLKHPLFP LLNIDPTMEI LNQFPDLINP TFLDFPTLNF QTSSSSAVGF  60
SPHTFHTPEF PANSSHHGFR LGNSLQDHEK KLLPRPDQPR NTELHESRKW KIIDQTPESS  120
LTHSSPPASE NGTKRTHCVG RRKRKRGGED EEEERPREVV HVRAKRGQAT DSHSLAERVR  180
RGKINERLKC LQEIVPGCYK VAMGMAVMLD EIINYVQSLQ NQVEFLSLKL AAASTYYDFN  240
SETDNRGTMQ RAKAYEGLKM QKPVREGCEG VSASTQFLPL HHNYGCCYPS LPHST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RRKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189658.10.0PREDICTED: transcription factor BEE 1-like isoform X1
RefseqXP_019189660.10.0PREDICTED: transcription factor BEE 1-like isoform X1
TrEMBLA0A1J6HUX56e-95A0A1J6HUX5_NICAT; Transcription factor bee 3
STRINGXP_009620411.16e-93(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-58BR enhanced expression 1