PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002586.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 512aa    MW: 57010.6 Da    PI: 6.2653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002586.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13322367454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h + ErrRR+++N++f++Lr+llP+       K +Ka++L  ++eY+ sL
  Itr_sc002586.1_g00001.1 322 HHVISERRRREKLNESFQQLRSLLPPG-----SKKDKASVLSNTTEYLASL 367
                              69999********************95.....599*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.082318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-17319391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-13320372No hitNo description
PfamPF000104.4E-11322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16322384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-15324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDMDFIFLLE EGERIAFLHQ LMQSLGCTYI CLWSYLPEPC NYFVCLDGLF IGDNNVARRL  60
FEEYRHSLPI AIDGRVPGYA FRNNLPHLEL RFEELQTLAS NRVQLQFYRE AGIKTVILMG  120
CRAGEVEVGM STNPQVNMEM EMMRVLSHEP ASKPTTSSST SLRSLSMESP TEYTSLLFNV  180
PAIPSTSYNA PSDDQPPQAT AGSLIRTGQF PFLSMRHTQE DDAMARAYLA VISSSSSSQA  240
RHSFASNFQN PTAFRTYRRS SSSSSENLSR NNNVPAALPI IRRLQGNMFR KCVAFFRNLD  300
LLSRQGLIHG ASAAPPSTTQ VHHVISERRR REKLNESFQQ LRSLLPPGSK KDKASVLSNT  360
TEYLASLKAR VEELTKKNQI LEGQVPPPPP QKAPAAKEEV GASSSAAAAE ERVDVSITNA  420
EESTSEEANC RFVDLRVLVR GEISMSDFVI RLLEFLKGVE NVGLISVEAN TTTVQSISVN  480
RMILRLTIPE GDEWDESAFQ EAVKRVVGDV AQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERRRRE
2327332RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173388.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1S3XLQ61e-139A0A1S3XLQ6_TOBAC; putative transcription factor bHLH041
STRINGXP_009793632.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-57bHLH family protein