PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002598.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 656aa    MW: 75232.4 Da    PI: 8.4163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002598.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.31e-09472512340
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                               WT+eE +ll ++v+++++g   +W+ I++++g+gRt +++
  Itr_sc002598.1_g00001.1 472 DWTKEEIDLLRKGVQKYPKGtsrRWEVISEYIGTGRTVEEI 512
                              5************************************9886 PP
2Myb_DNA-binding27.47.6e-09599643345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                               W+   +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Itr_sc002598.1_g00001.1 599 VWSVVQERALVQALKTFPKDasqRWERVAAAVP-GKTVNQCKKKFT 643
                              6********************************.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.28E-2082175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.9E-2090197IPR001623DnaJ domain
SMARTSM002712.2E-1596171IPR001623DnaJ domain
CDDcd062573.23E-1397168IPR001623DnaJ domain
PROSITE profilePS5007617.60497179IPR001623DnaJ domain
PfamPF002261.6E-1697176IPR001623DnaJ domain
PRINTSPR006253.8E-7102120IPR001623DnaJ domain
PRINTSPR006253.8E-7120135IPR001623DnaJ domain
PRINTSPR006253.8E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.4E-6465513IPR009057Homeodomain-like
SuperFamilySSF466892.62E-8467513IPR009057Homeodomain-like
PROSITE profilePS512937.959468523IPR017884SANT domain
SMARTSM007175.5E-8469522IPR001005SANT/Myb domain
PfamPF002492.2E-8472512IPR001005SANT/Myb domain
CDDcd001675.11E-6473512No hitNo description
PROSITE profilePS5129310.082595650IPR017884SANT domain
SMARTSM007172.7E-9596648IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-9598653IPR009057Homeodomain-like
PfamPF002492.3E-7599643IPR001005SANT/Myb domain
CDDcd001671.85E-6600646No hitNo description
Gene3DG3DSA:1.10.10.603.8E-5600646IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAIRDTLRLI SYEKEIVNGE PIFVSSNCLP IKAQRFEPAG HSFHSAALRL AGCFEEENVE  60
DNNHDVPTDK EESNFYSSES YSSKSKKKSS AEAKQQDHYA LLGLSHLRYL ATEDQIRKSY  120
REAALKHHPD KQAILLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPI RRRVFDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV SQPVPLLGND NTPYKEVDSF YDFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL TEKARKEEYA RIRMLVDNAY KRDPRIVRRK  300
EEEKAEKQRK KEAKVLAKKL QEEEAARIAE EERLRKEEEE KSAAEAALQQ KKLKEKEKKL  360
LRKERTRLRT ISAPLLSQNL LGLTNDDVEH LCTALNIDQL KNLCDGIEGR EGIAKAELLR  420
EALGRDHNSK DEKPKKDEKL NEKKNTQQNG SLAANGQKSQ NPFSSTEKKE RDWTKEEIDL  480
LRKGVQKYPK GTSRRWEVIS EYIGTGRTVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA  540
QTIASPLTTR EEVEGTSNAN KNENNTGSKV PNSQSSPSQT SSCQNPTDDL AANVAEGDVW  600
SVVQERALVQ ALKTFPKDAS QRWERVAAAV PGKTVNQCKK KFTLLKESFR NKKNAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1918629613123Zuotin
5dje_B2e-1918629613123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151839.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
TrEMBLA0A2G2W7050.0A0A2G2W705_CAPBA; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain