PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002610.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 189aa MW: 20934.5 Da PI: 6.3852

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002610.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	45.7	1.4e-14	1	36	26	61
zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + qPry+C++C+r+Wt+GG r++P Gg ++k+k+ Itr_sc002610.1_g00011.1 1 MDQPRYYCRTCKRHWTHGGIQRDIPSGGRSKKEKRF 36 57******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-8	1	35	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-13	1	35	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.258	1	35	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MDQPRYYCRT CKRHWTHGGI QRDIPSGGRS KKEKRFTTSH ENQRVQLALP SPPQLQPLSL 60 LPNLTPLAFI SPMVSPMMTP HDTSGGFLPP MVEKAINQPT QFQAENGYLN WVNPLNIVDQ 120 SFLHLTTRHS DSCMATFDLN NSGASSSNIL SVDASMGKIS TTDGGTNVSS DSLFVDIDEW 180 LDFSSDLAH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167853.1	2e-82	PREDICTED: dof zinc finger protein DOF5.6-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	1e-11	Dof family protein