PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002656.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 314aa    MW: 35494.2 Da    PI: 8.1883
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002656.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr+g+lKKA+E+SvLCda+v viifs++gkl+ y+s
  Itr_sc002656.1_g00004.1  9 KRIENKINRQVTFSKRRAGLLKKANEISVLCDADVGVIIFSTKGKLFQYAS 59
                             79***********************************************86 PP
2K-box738.5e-2581143769
                    K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                              + ++++   s++ e+akLk++ie L++++Rh++Ged++sLslkeLq+Le+q+++s+k+iRs+K
  Itr_sc002656.1_g00004.1  81 NPTDQESPGSWSLEYAKLKARIEFLEKSKRHYMGEDIDSLSLKELQNLEHQIDSSMKHIRSRK 143
                              4466777899****************************************************9 PP
3K-box16.34.1e-0718221468100
                    K-box  68 kKnellleqieelqkkekelqeenkaLrkklee 100
                              ++n+l+le+i+el kk ++l++en++L kk++e
  Itr_sc002656.1_g00004.1 182 QQNQLMLESISELHKKDRALKDENNKLAKKIKE 214
                              589***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-32288IPR002100Transcription factor, MADS-box
CDDcd002652.33E-38276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.6E-2385212IPR002487Transcription factor, K-box
PROSITE profilePS5129712.54688218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KANEISVLCD ADVGVIIFST KGKLFQYASD  60
SRMERILARY ERCSYAESLA NPTDQESPGS WSLEYAKLKA RIEFLEKSKR HYMGEDIDSL  120
SLKELQNLEH QIDSSMKHIR SRKLIVAIEI LLGGVVGKGL SLVPGGWRLW AEASKVPKGL  180
VQQNQLMLES ISELHKKDRA LKDENNKLAK KIKEREKEMA EQPNLEQQEK QDTNSSSSYX  240
KEMAEQPNLE QQEKQDTNSS SSYVPSQPIN SFNLGEMYEA AGEDREIEDA PAALPPPPPN  300
IVMPQWLLPH LTGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A3e-19270168MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B3e-19270168MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1tqe_P3e-19184183Myocyte-specific enhancer factor 2B
1tqe_Q3e-19184183Myocyte-specific enhancer factor 2B
1tqe_R3e-19184183Myocyte-specific enhancer factor 2B
1tqe_S3e-19184183Myocyte-specific enhancer factor 2B
3mu6_A2e-19270168Myocyte-specific enhancer factor 2A
3mu6_B2e-19270168Myocyte-specific enhancer factor 2A
3mu6_C2e-19270168Myocyte-specific enhancer factor 2A
3mu6_D2e-19270168Myocyte-specific enhancer factor 2A
6c9l_A3e-19184183Myocyte-specific enhancer factor 2B
6c9l_B3e-19184183Myocyte-specific enhancer factor 2B
6c9l_C3e-19184183Myocyte-specific enhancer factor 2B
6c9l_D3e-19184183Myocyte-specific enhancer factor 2B
6c9l_E3e-19184183Myocyte-specific enhancer factor 2B
6c9l_F3e-19184183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0131060.0AB013106.1 Ipomoea nil PnSAH2 gene for SQUA-AP1 homolog, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166844.11e-146PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ424294e-97AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2U8UAD21e-153A0A2U8UAD2_IPOBA; MBP4
STRINGXP_009625854.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-80AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]