PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002676.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 487aa    MW: 53618.6 Da    PI: 5.2097
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002676.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-074154482154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp++e++++L +++gL+ +q+ +WF N+R +
  Itr_sc002676.1_g00003.1 415 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 448
                              569*****************************87 PP
2ELK28.63.3e-10369390122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELKh+L+++Y+++++++++E++
  Itr_sc002676.1_g00003.1 369 ELKHELKQGYKEKIVDIREEIL 390
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-20185229IPR005540KNOX1
PfamPF037908.2E-18187228IPR005540KNOX1
SMARTSM012562.0E-28238293IPR005541KNOX2
PfamPF037918.9E-20242292IPR005541KNOX2
SMARTSM011886.1E-4369390IPR005539ELK domain
PfamPF037891.2E-6369390IPR005539ELK domain
PROSITE profilePS512139.969369389IPR005539ELK domain
PROSITE profilePS5007111.726389452IPR001356Homeobox domain
SuperFamilySSF466898.55E-16391456IPR009057Homeodomain-like
SMARTSM003892.3E-11391456IPR001356Homeobox domain
CDDcd000863.25E-11392453No hitNo description
Gene3DG3DSA:1.10.10.605.1E-25396453IPR009057Homeodomain-like
PfamPF059201.5E-17409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAYQNQLSQE MASLQHFSEQ QLGENSSVLR TILPQQLGGQ SSPTGKPAES QQQQAPPPTW  60
LNSAILRQQS QYVGDGSGGS GEGNFLNSHS NSESSAAAAA ASQASNQWLS RSILQRNVRD  120
DVPVSRDSMI AAAIMQESAA DLNANDDDDV KNIGNNDNHG GAAGGELGES EVVGGGTGIV  180
NWQNARYKAE ILAHPLYEQL LSAHVACLRI ATPVDQLPRI DAQLAQSQQV IAKYSALGHG  240
NLGDDRELDQ FLTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGAFCLKDF  300
KFIVQYLLAL GVSPGEGTGA TMSDDEDDQV DSDANLFDGG GLDGTDSLGF GPLIPTENER  360
SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKAWW QSHAKWPYPT  420
EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTSL KSKRKRYGVL FILNDAFYDS  480
ISAKSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12392456872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445465RKRNWHSNPSSSTSLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173953.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2R6PJ050.0A0A2R6PJ05_ACTCH; Homeobox protein knotted-1-like
STRINGXP_010265705.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-148KNOTTED1-like homeobox gene 3