PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002759.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 162aa    MW: 18333.5 Da    PI: 9.4049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002759.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-101766855
                             HHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  8 rErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55
                             +E++RR++++  +++L +l+  +    + +kK+s  + L +A++YIk+L+
  Itr_sc002759.1_g00001.1 17 AEKQRRQKLKGLYDQLASLVVISGenYPEKKKPSGLDLLDQATNYIKQLE 66
                             8*******************985555677788****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.782965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-111283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-121385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-71571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-61670No hitNo description
PfamPF000102.5E-71666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
METNPSFRTP KAGRHLAEKQ RRQKLKGLYD QLASLVVISG ENYPEKKKPS GLDLLDQATN  60
YIKQLEKNIS ELKARMDSVQ VPVEIAVKES ETLLEINIVC GSENKKLKMD KVIRILQEEG  120
AEVVSASFST VDLKVYHTIL CKVQYKLKRQ IMPSIQVLCV CS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181399.12e-69PREDICTED: uncharacterized protein LOC109176424
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-14bHLH family protein