PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002759.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 169aa MW: 18997 Da PI: 8.475

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002759.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.6e-10	16	65	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E++RR++++ +++L +l+ + +++K s + L +A++YIk+L+ Itr_sc002759.1_g00002.1 16 LAEKQRRQKLKGLYDQLASLVVSgENCLGKEKSSELDLLDRATNYIKQLE 65 58*******************9888999****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.36	9	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	11	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-14	13	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-7	15	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.80E-7	16	66	No hit	No description
Pfam	PF00010	1.9E-7	16	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDTIPSFRRP KAGRHLAEKQ RRQKLKGLYD QLASLVVSGE NCLGKEKSSE LDLLDRATNY 60 IKQLEKHINE LKARMDSLQV PVEITVKESD AGETLLEINI VCGSENKKLK MHKVIRILEE 120 EGAEVVSASF STVDLKAYHT ILCKDSYCLV NPNSKIRCLY LTHSIPAGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181399.1	1e-75	PREDICTED: uncharacterized protein LOC109176424

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13045	3	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	1e-13	bHLH family protein