PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002759.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 165aa    MW: 18469.2 Da    PI: 9.789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002759.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-111763755
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                              +E+ RR++++  +++L +l+P+     + +K   +++L +A++YIk+L+
  Itr_sc002759.1_g00004.1 17 LAEKHRRQQMKGLYARLASLVPHeK---SLEKSPASDVLDHATNYIKQLE 63
                             68*********************55...8999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.3981062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-131281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-61266No hitNo description
Gene3DG3DSA:4.10.280.108.7E-131478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-81668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-81763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MQPNSSSLPP PRPRRHLAEK HRRQQMKGLY ARLASLVPHE KSLEKSPASD VLDHATNYIK  60
QLESNINELK ARKDSLQLPV AIAVNESEGG ESLEINIVCG SENKKLKMDK VFRILQEEGA  120
EVVSATNSTV GLKIYHTILC KAFSPRIGMD TIRIQERLNN FISGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181415.19e-93PREDICTED: uncharacterized protein LOC109176442
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.16e-20bHLH family protein