PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002822.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 140aa    MW: 15656.1 Da    PI: 9.7808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002822.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.6e-081560855
                             HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                              E++RR+++++ + +L +l+   +   + +K   ++ L +A+++Ik+L+
  Itr_sc002822.1_g00002.1 15 TEKNRRQQMKDLYRRLASLVSReN---TLEKSPASDLLGEATNFIKQLE 60
                             7*********************66...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.385759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.48E-51260No hitNo description
SMARTSM003534.3E-51365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-101474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-111479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-51560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MKPTSSSPGP GRRLTEKNRR QQMKDLYRRL ASLVSRENTL EKSPASDLLG EATNFIKQLE  60
GNVNELKARK DSLQLPIVII GVNESETGER LEINIVCGSE NKKLKMHKVF CILKEEGGEV  120
VSAYNSTVGL KIYHTILCKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181310.13e-83PREDICTED: transcription factor bHLH36-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-16bHLH family protein