PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002828.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 314aa    MW: 35645.1 Da    PI: 7.7528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002828.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-086791126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             ykt+ C  f++ G C+ G+ C+FaHg
  Itr_sc002828.1_g00001.1 67 YKTRVCAKFLE-GKCRNGEHCTFAHG 91
                             9**********.*************8 PP
2zf-CCCH22.42.1e-07125147225
                              -S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                              + ++C+ f+ + +C+yG++C+F H
  Itr_sc002828.1_g00001.1 125 RVKICK-FYNGEECPYGENCNFLH 147
                              567899.77746************ PP
3zf-CCCH40.54.6e-13205231127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +kt+lC+ +  tG+C++G+rC++aHg+
  Itr_sc002828.1_g00001.1 205 WKTRLCSKYEITGQCPFGERCHYAHGK 231
                              8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-86497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-146499IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-46692IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3286693IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-66791IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4123149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5126148IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5126147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6127148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-15203235IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7204231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-10204235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385204232IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10205231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSFPDPPPPI LLNQEQSELN PQFDHAPPFK RRRNSENNQL SSFSFPPMNP RVNLPNVPGK  60
GSGHIFYKTR VCAKFLEGKC RNGEHCTFAH GADDLREPPP NWQDLVREKD RVAGSWNDDQ  120
KIIPRVKICK FYNGEECPYG ENCNFLHERP PKFKSDMVKD HMESSAISIA TTNSITARRS  180
GSDQLESHKH ASVDLDIHRP KLAFWKTRLC SKYEITGQCP FGERCHYAHG KSELQAFSGR  240
SDTGEATNFP PVPIEPLSIA AGDSFCTNQV AWKDEPGGKK FHIWKLTKKI SGIYADWIDE  300
ANPPHLLYDS EILR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158177.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1CEA91e-119M1CEA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655851e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-60C3H family protein