PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002834.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 369aa MW: 41521.8 Da PI: 4.8379

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002834.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	202	245	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + +++ +iL +++Y+k+L Itr_sc002834.1_g00001.1 202 LMAERRRRKRLNDRLSMLRSVVPKiS------RMDRTSILGDTIDYMKEL 245 589*******************66......9*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	199	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	202	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-11	202	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-4	203	250	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	203	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00443	295	336	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEYYESGFLE ELLSLRSDDS WESCFPVGMN IVHNDDEVYC NNNYNVISGN IIDLDYEGKN 60 PSPLPSSSIT ASFDHGCSNF PPFDRYTLMS CYSFDGEFYT PLPFGDELSP PLTADSSNTK 120 IDTPPPPPVA AFRSGQENLS AILDEVTNCF HHQQNLEALE IGCKVEAVHH QSCGGERPSG 180 GGMLPEKRSK VRNPHGQPSK NLMAERRRRK RLNDRLSMLR SVVPKISRMD RTSILGDTID 240 YMKELLEKIK NLQGEMEMGQ NQLSQNTIFK DVKPNEMLVR NSPKFDVQRR GESDTKIEIC 300 CAGKPSLLLS TVNTLESFGL EIQQCVISCF NEFAMQASCT EAMEHREILS EEDIKQQLFK 360 NAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEYYESGFLE ELLSLRSDDS WESCFPVGMN IVHNDDEVYC NNNYNVISGN IIDLDYEGKN  60
PSPLPSSSIT ASFDHGCSNF PPFDRYTLMS CYSFDGEFYT PLPFGDELSP PLTADSSNTK  120
IDTPPPPPVA AFRSGQENLS AILDEVTNCF HHQQNLEALE IGCKVEAVHH QSCGGERPSG  180
GGMLPEKRSK VRNPHGQPSK NLMAERRRRK RLNDRLSMLR SVVPKISRMD RTSILGDTID  240
YMKELLEKIK NLQGEMEMGQ NQLSQNTIFK DVKPNEMLVR NSPKFDVQRR GESDTKIEIC  300
CAGKPSLLLS TVNTLESFGL EIQQCVISCF NEFAMQASCT EAMEHREILS EEDIKQQLFK  360
NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	211	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175154.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-73	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1S4BNM4	1e-112	A0A1S4BNM4_TOBAC; transcription factor bHLH93-like
STRING	XP_009623441.1	1e-113	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	9e-76	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]