PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002889.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 174aa    MW: 19229.1 Da    PI: 6.6004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002889.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31114172159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp++v++tY g Hnh+
  Itr_sc002889.1_g00003.1 114 LDDGYKWRKYGKKKVKNSPNPRNYYRCSVNGCPVKKRVERDKEDPSYVITTYVGIHNHQ 172
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-33101172IPR003657WRKY domain
SuperFamilySSF1182901.96E-28107173IPR003657WRKY domain
PROSITE profilePS5081130.745109174IPR003657WRKY domain
SMARTSM007744.7E-34114173IPR003657WRKY domain
PfamPF031061.3E-24115172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDGNNHHHHY YYTTHHNDDS TFARQDSGFE LSEFFDLDVW PPEEDPVFAV AGHPQNPGQT  60
TAVDAVMVPS GGGGGASYAG PSSSITDSGG GMERTAAGVT EKFAFKTKSD IEILDDGYKW  120
RKYGKKKVKN SPNPRNYYRC SVNGCPVKKR VERDKEDPSY VITTYVGIHN HQGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-23105174877Probable WRKY transcription factor 4
2lex_A3e-23105174877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154163.14e-91PREDICTED: probable WRKY transcription factor 50
RefseqXP_019154164.14e-91PREDICTED: probable WRKY transcription factor 50
RefseqXP_019154165.14e-91PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ51e-40WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLQ5ND895e-51Q5ND89_TOBAC; Putative WRKY transcription factor 11
STRINGXP_009594857.11e-51(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-28WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]