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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc002891.1_g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 253aa MW: 26802.8 Da PI: 7.2501 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.6 | 0.0002 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Itr_sc002891.1_g00001.1 60 FSCNYCQRKFYSSQALGGHQNAH 82
89*****************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 1.21E-6 | 57 | 88 | No hit | No description |
| PROSITE profile | PS50157 | 11.427 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 253 aa Download sequence Send to blast |
MENNHEGDDD EVSLDLSLGC RDAAANAAAA ADGLQVTSPL QDVGSDVSES GGGGGDRRVF 60 SCNYCQRKFY SSQALGGHQN AHKRERTMAK RGQRMAAAAA VTAYGYHPAA TAASVPLPLP 120 LHGPYNRSLG IHFHSMIQKP ATYFGAPSPF PGSTQMPSPS IYGYNAWTRR PFDQPPPIGR 180 LAPESYHVGT RLPPSSSSSL PNTAMGRFDM PYRSPTVVDG IGDGYRMDIS GAGAGASSSK 240 SQQEIDLDLS LKL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019151751.1 | 1e-107 | PREDICTED: zinc finger protein 3-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5827 | 22 | 33 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G25160.1 | 8e-32 | zinc finger protein 3 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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