PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002928.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 267aa MW: 29204.7 Da PI: 8.4747

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002928.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.2	9e-16	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ Itr_sc002928.1_g00001.1 27 RSRWNPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 87 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.3	9e-35	27	89	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+P+peQi iLe++++sG+++P+kee+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Itr_sc002928.1_g00001.1 27 RSRWNPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 89 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-9	5	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-14	21	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.353	23	88	IPR001356	Homeobox domain
SMART	SM00389	3.5E-6	25	92	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-13	27	87	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEDYQDSSSS TSSPKKNNTP ERNEGVRSRW NPKPEQILIL ESIFNSGMVN PPKEETVRIR 60 KLLEKFGAVG DANVFYWFQN RRSRSRRRQR QLQLQATLGP PPATADHPQH AGAAAGVAIS 120 SCVFPPSSAS NSAVSSYFPN LLGSSSSSSS SPCCGGGVDD EMLCLSGGET MMSMNSAGIE 180 PAGSSITPSS LMSSHDASHL QYHQPVVLKR YYSCAERKLQ LHGTETIYPF CSSRRMTPAQ 240 LHFPFNITAV TVQYNCSISS TQLQYQP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019196112.1	2e-88	PREDICTED: WUSCHEL-related homeobox 11
TrEMBL	A0A2P6RHC6	1e-39	A0A2P6RHC6_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_002525671.1	3e-37	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	4e-33	WUSCHEL related homeobox 11