PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002962.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family S1Fa-like
Protein Properties Length: 87aa    MW: 9664.52 Da    PI: 10.4818
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002962.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.33.9e-392087370
                     S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                             ++ v akGlnPG+ivllv+ggl+l flvgny+ly++aqk+l P+kkkPvskkk+kre+l+qGv++PGe
  Itr_sc002962.1_g00008.1 20 KNVVTAKGLNPGMIVLLVIGGLVLAFLVGNYLLYMHAQKTLGPKKKKPVSKKKMKRERLRQGVSAPGE 87
                             677899*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046893.1E-372487IPR006779DNA binding protein S1FA
ProDomPD0190130.0052687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MDFEEEFADQ HVPPSFDPMK NVVTAKGLNP GMIVLLVIGG LVLAFLVGNY LLYMHAQKTL  60
GPKKKKPVSK KKMKRERLRQ GVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152005.14e-44PREDICTED: DNA-binding protein S1FA-like
SwissprotQ423372e-15S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLB9SGP82e-24B9SGP8_RICCO; DNA-binding protein S1FA, putative
STRINGXP_002525167.14e-25(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.19e-06S1FA-like DNA-binding protein