PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002975.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 440aa    MW: 48902.5 Da    PI: 8.5212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002975.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-15145192148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+W++ Ed+ll + ++++G g+W++ +++ g+ R++k+c++rw +yl
  Itr_sc002975.1_g00001.1 145 KGPWSAKEDLLLTNHIQEHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 192
                              79******************************99************97 PP
2Myb_DNA-binding569e-18198243148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++++eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  Itr_sc002975.1_g00001.1 198 RGNFSQEEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 243
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-22136195IPR009057Homeodomain-like
PROSITE profilePS5129415.221140192IPR017930Myb domain
SuperFamilySSF466898.98E-29142239IPR009057Homeodomain-like
SMARTSM007174.0E-12144194IPR001005SANT/Myb domain
PfamPF002491.2E-13145192IPR001005SANT/Myb domain
CDDcd001671.05E-9147192No hitNo description
PROSITE profilePS5129426.153193247IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-26196248IPR009057Homeodomain-like
SMARTSM007172.0E-16197245IPR001005SANT/Myb domain
PfamPF002494.7E-16198243IPR001005SANT/Myb domain
CDDcd001671.60E-12200243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MYGRLAAKLN RPLLGLIPRN QYCLPERLLS ASIGRTTDPD LHGGDVDVEY DVAEAKKAKT  60
ATGESEIKPS NTGKVPISPS KSPFWWLEKQ HDLCTNLWSC GLVAPLLYTS PPPLIFSSHL  120
LFSLNSQTHS DMGRAPCCSK EGLRKGPWSA KEDLLLTNHI QEHGEGQWRS LPKKAGLLRC  180
GKSCRLRWMN YLRPGIKRGN FSQEEEDLIV RLHSLLGNRW SLIAGRLPGR TDNEIKNYWN  240
THLLKKLKSA GIEPKPRQAK KKPAKPRPDS QNLNPNKKKK QKARNSEQPL RQADQTTPPE  300
KTQNRTKVYA PKPIRLSPPG ISRINSLEDV AGSVSSSSGE VDNKAAVTAE PPPFIPWHLY  360
ELGGGGDVDF CDQILDGCDL SSPKCSGPTT DGLLEKVYDE YLHLLSENCF ESLTDDYLCD  420
YPFVDDNVAP TTSSNNSDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2514324725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259279KKKPAKPRPDSQNLNPNKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160401.11e-176PREDICTED: myb-related protein 308-like
TrEMBLA0A328E3D01e-108A0A328E3D0_9ASTE; Uncharacterized protein
STRINGXP_009602702.11e-103(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-61myb domain protein 9