PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003031.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22243.9 Da    PI: 10.2645
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003031.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.2e-16137176140
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                   SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 
                              krie+k +r++tf+k r+g++KKA+EL+  C+ae+avi f
  Itr_sc003031.1_g00001.1 137 KRIEDKAKRHTTFTKGRQGLFKKASELCKRCNAEAAVITF 176
                              79************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118413.20972196IPR003347JmjC domain
PROSITE profilePS5006620.395129189IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-16129188IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-12131151IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-17131194IPR002100Transcription factor, MADS-box
PfamPF003193.0E-15138183IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-12151166IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-12166187IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
SRKYTLHGFE KMAGRRAARK YGISGCLPAS HLEKQFWEEM SGGGRGKKEM VEYGINIDGS  60
AFSSSVNDPL GASNWNLNKL KQLPRSMFRL LENKIPGLTD PMLYIGMLFS MFAWHVEDHY  120
LYRPEDLIMV RTKVEIKRIE DKAKRHTTFT KGRQGLFKKA SELCKRCNAE AAVITFLLVG  180
NAFAFGYPSV NVVLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-47212295212Transcription factor jumonji (Jmj) family protein
6ip4_A1e-47212295212Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-9' (H3K9me) of histone H3 with a specific activity for H3K9me3 and H3K9me2. No activity on H3K4me3, H3K9me1, H3K27me2 and H3K36me3/2. Involved in the control of floral organ development by demethylating H3K9me3 and H3K9me2 in the promoter regions of DH1 and MADS47. The 'Lys-9' demethylation of these two genes is required for induction of their expression. {ECO:0000269|PubMed:18765808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184182.11e-74PREDICTED: lysine-specific demethylase JMJ706-like
SwissprotQ336N85e-44JM706_ORYSJ; Lysine-specific demethylase JMJ706
TrEMBLA0A1U8G8T33e-49A0A1U8G8T3_CAPAN; lysine-specific demethylase JMJ706-like
TrEMBLA0A2U1KLB73e-49A0A2U1KLB7_ARTAN; JmjC domain, JmjN domain, Zinc finger, C5HC2-type
STRINGSolyc03g097090.2.13e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Sun Q,Zhou DX
    Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(36): p. 13679-84
    [PMID:18765808]