PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003068.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 204aa    MW: 21891.7 Da    PI: 9.0589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003068.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-182574255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr ++ +g++ AeIrd ++    ++r +lg+f +aeeAa+a++aa++kl+g
  Itr_sc003068.1_g00004.1 25 KFRGVRKRS-WGKFSAEIRDpWK----KTRLWLGTFLSAEEAARAYDAAARKLNG 74
                             89****888.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-332588IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-202582IPR016177DNA-binding domain
PfamPF008471.4E-102574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-292582IPR001471AP2/ERF domain
PROSITE profilePS5103221.8782582IPR001471AP2/ERF domain
CDDcd000181.98E-142581No hitNo description
PRINTSPR003673.1E-92637IPR001471AP2/ERF domain
PRINTSPR003673.1E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MARGRAAAAA AAGDAVGSGE LKEVKFRGVR KRSWGKFSAE IRDPWKKTRL WLGTFLSAEE  60
AARAYDAAAR KLNGPRVKTN FPPPPISQLP PYNQTAIPKN PLIGSLMISQ RPASSSMSST  120
VESFSGPRPP PPHTAATPNR RHPRSPPIAP DDCHSDCDSS SSVVDDGDCE NIASSSFRKP  180
LSFDLNLPPA MDDVCDLHST ALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-162682663ATERF1
3gcc_A5e-162682663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194387.12e-76PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS82e-50ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV082e-82A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373591e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-21ethylene responsive element binding factor 3