PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003111.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

YABBY

Protein Properties

Length: 101aa MW: 11189.7 Da PI: 4.4388

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003111.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	43.1	1.6e-13	18	82	24	88
YABBY 24 vsvPs.tslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 vsvP +s++++v vrCGhC++llsv+l + + ++ ++++ +++ + +++ +n++ n+ + Itr_sc003111.1_g00006.1 18 VSVPCiSSMLNTVVVRCGHCSNLLSVDLGALLHPFPLQD-FQQQEQHQFEDAMGSVPSNYNCNMFS 82 9999637899**************************999.58899999999999999999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.5E-13	18	69	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MHLMDGPEPS PTAPDSKVSV PCISSMLNTV VVRCGHCSNL LSVDLGALLH PFPLQDFQQQ 60 EQHQFEDAMG SVPSNYNCNM FSVFESHDQL LEQSILTPMR S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163425.1	5e-42	PREDICTED: axial regulator YABBY 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-07	YABBY family protein