PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003138.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 179aa    MW: 19760 Da    PI: 8.5425
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003138.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.54.6e-1884179187
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 
                              kfY +YA +vGF+vr+s+ +k+ r+g + ++ +vCs++ +++++k+           + + +r+r+++++gC+ak+  k+  dg +
  Itr_sc003138.1_g00005.1  84 KFYVRYACTVGFEVRRSTDSKN-REGDVLRKYLVCSCQVFKQPTKEVclvgdgvggvSISPKRRRVTNKVGCNAKIIFKLIGDGGY 168
                              6*****************9999.6677****************9999*********99999999********************** PP

                     FAR1  77 evtkleleHnH 87 
                               v +le+ H+H
  Itr_sc003138.1_g00005.1 169 SVFSLEERHTH 179
                              **********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1584179IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MCTWAVYGCS IVKLIVLLLV FNCPIGHVAA AFCSDENAAI DSGGSSGCVM DISPGKMKYW  60
MPIYDEASKP FVGQRFCKLD DCVKFYVRYA CTVGFEVRRS TDSKNREGDV LRKYLVCSCQ  120
VFKQPTKEVC LVGDGVGGVS ISPKRRRVTN KVGCNAKIIF KLIGDGGYSV FSLEERHTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172923.14e-57PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-09FAR1 family protein