PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003139.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 59aa    MW: 6668.93 Da    PI: 10.859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003139.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-073450420
                             ---SGGGGTS--TTTTT CS
                  zf-CCCH  4 elCrffartGtCkyGdr 20
                             +lC++++r GtCk+G++
  Itr_sc003139.1_g00001.1 34 RLCQYYLRKGTCKFGAS 50
                             79*************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006425.7E-53450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MEIVKLGWLA SRALLNNAAK PVTPSSVRSI RNDRLCQYYL RKGTCKFGAS PKKCWMVNP